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Showing posts with label testing. Show all posts
Showing posts with label testing. Show all posts
19 March 2013

363. Generating an image in PyMol

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For some reason I needed to quickly generate a publication quality figure of a protein. Deep View (SWiss PDB viewer) isn't available f...
20 February 2013

342. Compiling Kernel 3.8 on Debian Testing/Wheezy

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NOTE: It seems like series 3.8 has issues with intel (i915) graphics -- it occasionally generates kworker threads that causes unresponsiven...
8 comments:
22 December 2012

298. Hantek DSO 2250 USB with Openhantek on Debian Testing/Wheezy /Linux

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Update 23 May 2013: Updated as per Peter Jeffris' suggestion (see below)/ UPDATE : this has been updated as per the developer's (...
13 comments:
19 December 2012

296. Building Wine 1.5.19 on Debian (Wheezy/Testing) without errors

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UPDATE 16 May 2013:  See here for Wine 1.5.30:  http://verahill.blogspot.com.au/2013/05/416-wine-1530-in-chroot.html UPDATE (10th Jan 2013...
3 comments:
25 October 2012

266. Back-up your gmail using getmail on debian testing/wheezy

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Since I'm thinking about moving universities the issue of backing up my work email (which is hosted by gmail) account is weighing at the...
2 comments:
24 October 2012

265. shmmax revisited -- and shmall, shmmni

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I've upgraded two of my nodes -- my old 4 core node with 8 GB ram now has 4x4=16 GB RAM, while my old 8 core, 16 GB ram now has 4*8=32 ...
16 October 2012

258. Briefly: Throttle CPU between certain hours on linux

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Because university administrators apparently don't consider academics trustworthy enough, at my university each office has an AC unit wh...
15 October 2012

256. Briefly: Setting up ganglia on a debian beowulf cluster

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On all your nodes (e.g. using clusterssh ): sudo apt-get install ganglia-monitor On your front node only: sudo apt-get install ganglia-w...
12 October 2012

254. Compiling Thunderbird 16 on Debian Wheezy

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I've posted how to compile thunderbird ( 12 and 13 ) in the past. Here's v 16.0.1: First you need to sort out the dependencies: ...
2 comments:
25 September 2012

246. Cluster network performance testing (very basic) on Debian Testing using a gigabit switch

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Playing with hpcc got me thinking about my network connection. My cluster looks like this: I've got four nodes which are connected ...

245. Recompile debian's hpcc with other libs

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I installed hpcc using apt-get, but -- and this is a first -- when trying to run it complained over missing libs. Why compile? hpcc ...
21 September 2012

244. Molden on debian testing

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Update: avogadro can write gamess input files, but seems to offer little in the way of showing detailed output from gamess output files. Al...
3 comments:
13 September 2012

234. CPMD with netlib lapack, blas and your own fftw on debian testing

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This is a minor update to my previous post on CPMD . Back in the days I had issue linking to my Openblas libs (got a binary which would not ...
12 September 2012

233. Compiling netlib's lapack and blas on Debian Testing (Wheezy)

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In addition to specific BLAS/LAPACK libs such as ACML, MKL, and ATLAS netlib  provides (what I understand to be) reference versions of BLAS ...
11 September 2012

232. Compile parallel (threaded) povray 3.7-rc6 on Debian Wheezy

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Update 13 May 2013: This build won't work with v3.7-rc7 on debian wheezy if you have libjpeg62 installed. See  http://verahill.blogspot....
5 comments:

231. Compiling john the ripper: single/serial, parallel/OMP and MPI

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Update: updated for v1.7.9-jumbo-7 since hccap2john in 1.7.9-jumbo-6 was broken For no particular reason at all, here's how to compil...
07 September 2012

228. Setting up Asus (nvidia) GF 210 on Debian Testing

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NOTE:   Unless I remove the legacy driver, *DM will not start. Instead I only get a blank screen with a blinking cursor. See below for solut...