This is a quick description of how to install gOpenMol (software for visualising output from various comp. chem. packages) on debian:
wget http://www.csc.fi/english/pages/g0penMol/Downloads/gopenmol-3.00-linux.tar.gz
gopenmol-3.00-linux.tar.gz
tar xvf gopenmol-3.00-linux.tar.gz
sudo mv gOpenMol-3.00 /opt/
/opt/gOpenMol-3.00/./install
echo 'export PATH=$PATH:/opt/gOpenMol-3.00/bin' >> ~/.bashrc
source ~/.bashrc
rungOpenMol
I'm having issues with a transparent background in the main window on my nvidia box. Not sure what it's like on other machines.