Showing posts with label mint. Show all posts
Showing posts with label mint. Show all posts

13 September 2012

234. CPMD with netlib lapack, blas and your own fftw on debian testing

This is a minor update to my previous post on CPMD. Back in the days I had issue linking to my Openblas libs (got a binary which would not run properly) but I've since had success with the netlib lapack and blas libs.

1. Compile the netlib lapack and blas libraries according to this post: http://verahill.blogspot.com.au/2012/09/compiling-netlibs-lapack-and-blas-on.html

2. Compile the fftw libraries according to this post (ignore the sections on Openblas and Gromacs):
http://verahill.blogspot.com.au/2012/05/gromacs-with-external-fftw3-and-blas-on.html

3. Compile CPMD. We'll be following this post in large parts.
Register with cpmd.org. Once you're approved download the cpmd source to ~/tmp.

sudo apt-get install libopenmpi-dev openmpi-bin

cd ~/tmp
tar -xvf cpmd-v3_15_3.tar.gz
cd CPMD/CONFIGURE
Create the file LINUX-x86_64-DEBIAN:
   
     IRAT=2
     CFLAGS='-c -O2 -Wall'
     CPP='/lib/cpp -P -C -traditional'
     CPPFLAGS='-D__Linux -D__PGI -D__GNU -DFFT_FFTW3 -DPARALLEL -DPOINTER8'
     FFLAGS='-c -O2 -fcray-pointer -fno-whole-file -fsecond-underscore'
     LFLAGS='-l:/opt/fftw/fftw-3.3.2/double/lib/libfftw3.a -l:/opt/fftw/fftw-3.3.2/double/lib/libfftw3_mpi.a -l:/opt/fftw/fftw-3.3.2/double/lib/libfftw3_threads.a -I/usr/include -l:/opt/netlib/blas/lib/libnetblas.so -l:/opt/netlib/lapack/lib/liblapack.so -lpthread -lmpi'
     FFLAGS_GROMOS='  $(FFLAGS)' 
      FC='mpif77 -fbounds-check'
      CC='mpicc'
      LD='mpif77 -fbounds-check'

Next edit ~/tmp/CPMD/wfnio.F and change the following lines:
 15       CHARACTER(len=*) TAG
 63         IF(TAG(1:2).EQ.'NI') THEN
201       IF(TAG(1:2).NE.'NI') THEN
271         IF(TAG(1:2).EQ.'NI') THEN

Now, in ~/tmp/CPMD, run
./mkconfig.sh LINUX-x86_64-DEBIAN > Makefile
make
sudo mkdir /opt/cpmd
sudo chown $USER /opt/cpmd
cp cpmd.x /opt/cpmd


And follow everything below 'Done! Almost.' in this post: http://verahill.blogspot.com.au/2012/07/not-solved-compiling-cpmd-on-debian.html